Math functions for the Java 3D Graphics API

Ops created for BoneJ2

The Volume Calculator plugin is designed to let users measure the volumes of arbitrary segments of blood vessels by selecting them directly from a 3D image. Although Volume Calculator was developed for quantification in a mouse hindlimb ischemia ...

DEVILS as an ImageJ 1.x plugin.

QuimP software, a set of plugins for ImageJ to quantify spatio-temporal patterns of fluorescently labeled proteins in the cortex of moving cells.

Package contains image processing algorithms developed in MOSAIC Group

The ImageJ framework for semi-automated tracing of neurons and other tube-like structures.

A plugin to create SBML model from microscopic images

JFilament, 2D and 3D active contours.

The mavenized versions of the BoneJ1 plugins

The Domain Presentation Layer (DPL) of BoneJ2, i.e. the commands that wrap the needed ops, and present results for skeletal biologists.