Group: Fiji

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Helpers to use BigDataViewer as quick visualization in other projects

BigDataViewer core classes with minimal dependencies.

representation of multi-angle, multi-channel (etc.) SPIM images and their registration

3D Viewer for visualizing image stacks three-dimensionally.

Fiji BigDataViewer

Trainable Segmentation plugin for Fiji.

This project serves purely for phasing out ImgLib1 in favor of ImgLib2.

Utility classes for Fiji-based projects.

TrackMate plugin for Fiji.

bUnwarpJ plugin for Fiji.

Auto Local Threshold plugin for Fiji.

IO plugin for Fiji.

VIB plugin for Fiji.

A tool for manual pointwise deformable registration using bigdataviewer.

Fiji Plugins plugin for Fiji.

Support library for all the VIB stuff.

KymographBuilder: Yet Another Kymograph Fiji plugin.

As of now, drag-and-drop scijava (Fiji) handler that opens N5 Importer dialog or BigDataViewer right-away.

TrakEM2 plugin for ImageJ.

BigDataViewer Actions and GUI