The protein structure modules of BioJava.

flexible scenegraphing and rendering for scientific visualisation

Library for finding possible interactions in proteins.

BioJava AA Prop

A module which only has the purpose to run slow running integration tests. They can be executed by calling mvn verify

Biojava Spark is a series of libraries and functions for using Spark with Biojava.

BioJava Structure GUI

Protein structure descriptors and alignment based on 3D Zernike moments.

MMTF Update

The BioCommons library contains classes to work with 2D and 3D structural bioinformatics data. There are parsers for PDB and mmCIF files and many formats of 2D structure with classifications and notations used in the literature, as well as ...