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HTSJDK

A Java API for high-throughput sequencing data (HTS) formats

Artifacts using HTSJDK (132)
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1.Core Genometry (Data Models)44 usages

org.lorainelab.igb » genometry

Core Genometry (Data Models)
Last Release on May 6, 2025

2.NGS Utilities37 usages

com.github.biopet » ngs-utils MIT

ngs-utils
Last Release on Oct 25, 2018

3.Hadoop BAM26 usages

org.seqdoop » hadoop-bam MIT

A Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework.
Last Release on Apr 23, 2018

4.Biodata Models25 usages

org.opencb.biodata » biodata-models Apache

Biological entities and their equivalents in different file formats typically used in bioinformatics
Last Release on Feb 24, 2026

5.ADAM_2.12: Core22 usages

org.bdgenomics.adam » adam-core-spark2 Apache

ADAM_2.12: Core
Last Release on Dec 16, 2020

6.Biodata Formats19 usages

org.opencb.biodata » biodata-formats Apache

Biological entities and their equivalents in different file formats typically used in bioinformatics
Last Release on Feb 24, 2026

7.Picard18 usages

com.github.broadinstitute » picard MIT

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Last Release on Apr 13, 2025

8.DSH Compress17 usages

org.dishevelled » dsh-compress LGPL

Compression utility classes.
Last Release on May 8, 2026

9.Biodata Tools14 usages

org.opencb.biodata » biodata-tools Apache

Biological entities and their equivalents in different file formats typically used in bioinformatics
Last Release on Feb 24, 2026

10.OpenCGA Core12 usages

org.opencb.opencga » opencga-core Apache

OpenCGA Core
Last Release on Aug 7, 2025