Allows to display a progress bar in the R console for long running computations taking place in c++ code, and support for interrupting those computations even in multithreaded code, typically using OpenMP.

Makes the 'Qhull' library <http://www.qhull.org> available in R, in a similar manner as in Octave and MATLAB. Qhull computes convex hulls, Delaunay triangulations, halfspace intersections about a point, Voronoi diagrams, furthest-site Delaunay ...

Fast generic solver for sparse group lasso optimization problems. The loss (objective) function must be defined in a C++ module.

Provides infrastructure to accurately measure and compare the execution time of R expressions.

Tools for measuring similarity among documents and detecting passages which have been reused. Implements shingled n-gram, skip n-gram, and other tokenizers; similarity/dissimilarity functions; pairwise comparisons; minhash and locality sensitive ...

Numerical integration of cause-specific survival curves to arrive at cause-specific cumulative incidence functions, with three usage modes: 1) Convenient API for parametric survival regression followed by competing-risk analysis, 2) API for CFC, ...

Functions to discover, plot, and select multiple mediators from an x -> M -> y linear system. This exploratory mediation analysis is performed using the Coordinate-wise Mediation Filter as introduced by Van Kesteren and Oberski (2019) <arXiv: ...

Implementation of a model-based approach for clustering and multiple change points in dynamic graphs (Marco Corneli, Pierre Latouche and Fabrice Rossi (2018) <doi.org/10.1007/s11222-017-9775-1>).

Frequently used methods in genomic applications with emphasis on parallel computing (OpenMP). At its core, the package has a Gibbs Sampler that allows running univariate linear mixed models that have both, sparse and dense design matrices.

Phase I/II adaptive dose-finding design for combination studies where toxicity rates are supposed to increase with both agents.

Phase I/II adaptive dose-finding design for single-agent Molecularly Targeted Agent (MTA), according to the paper "Phase I/II Dose-Finding Design for Molecularly Targeted Agent: Plateau Determination using Adaptive Randomization", Riviere ...