BioJava is an open-source project dedicated to providing a Java framework for processing biological
data. It provides analytical and statistical routines, parsers for common file formats and allows the
manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application
development for bioinformatics.
Compile Dependencies (0)
| Category/License | Group / Artifact | Version | Updates |
|---|
Managed Dependencies (13)
| Category/License | Group / Artifact | Version | Updates | |
|---|---|---|---|---|
XML Processing
EDL 1.0
|  | com.sun.xml.bind
»
jaxb-core Old JAXB Core module. Contains sources required by XJC, JXC and Runtime modules with dependencies. | 2.3.0.1 | 4.0.8 |
XML Processing
EDL 1.0
| | com.sun.xml.bind
»
jaxb-impl Old JAXB Runtime module. Contains sources required for runtime processing. | 2.3.3 | 4.0.8 |
Java Spec
EDL 1.0
|  | javax.activation
»
activation Jakarta Activation API 2.2 Specification | 1.1.1 | 2.1.4 |
XML Processing
EDL 1.0
| | javax.xml.bind
»
jaxb-api Jakarta XML Binding (JAXB) API that allows Java developers to map Java classes to XML representations and perform ... | 2.3.1 | 4.0.5 |
Testing
EPL 2.0
|  | junit
»
junit JUnit Jupiter is the API for writing tests using JUnit 5. | 4.13.2 | 6.0.3 |
Logging Bridge
Apache 2.0
|  | org.apache.logging.log4j
»
log4j-slf4j-impl The Apache Log4j SLF4J 2.0 API binding to Log4j 2 Core | 2.14.0 | 2.26.0 |
Logging
Apache 2.0
| | org.apache.logging.log4j
»
log4j-api API for Apache Log4J, a highly configurable logging tool that focuses on performance and low garbage generation. It has ... | 2.14.0 | 2.26.0 |
Logging
Apache 2.0
| | org.apache.logging.log4j
»
log4j-core7 vulnerabilities Implementation for Apache Log4J, a highly configurable logging tool that focuses on performance and low garbage ... | 2.14.0 | 2.26.0 |
| org.biojava.thirdparty
»
forester Applications and software libraries for evolutionary biology and comparative genomics research | 1.039 | ✔ | |
Testing
EPL 2.0
| | org.junit.jupiter
»
junit-jupiter-engine Core package for the JUnit Jupiter test engine. | 5.7.2 | 6.0.3 |
Testing
EPL 2.0
| | org.junit.jupiter
»
junit-jupiter-params JUnit Jupiter extension for running parameterized tests. | 5.7.2 | 6.0.3 |
Testing
EPL 2.0
| | org.junit.vintage
»
junit-vintage-engine A thin layer on top of JUnit 4 to allow running vintage tests (based on JUnit 3.8 and JUnit 4) with the JUnit Platform ... | 5.7.2 | 6.0.3 |
Logging
MIT
|  | org.slf4j
»
slf4j-api API for SLF4J (The Simple Logging Facade for Java) which serves as a simple facade or abstraction for various logging ... | 1.7.30 | 2.0.18 |
