Applications and software libraries for evolutionary biology and comparative genomics research

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BioJava Alignment
Last Release on May 6, 2026
BioJava Phylo
Last Release on Jun 30, 2018
TASSEL is a software package to evaluate traits associations, evolutionary patterns, and linkage disequilibrium.
Last Release on Mar 31, 2025
PHG - Practical Haplotype Graph
Last Release on Aug 20, 2024
TASSEL is a software package to evaluate traits associations, evolutionary patterns, and linkage disequilibrium.
Last Release on Jul 22, 2025
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