Group: Bioimageanalysis Icy

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Icy is an open community platform for bioimage informatics

Blocks plugin for Icy. Also known as "Protocols SDK" This plugin provide interfaces to make plugin compatible with Protocols(Graphical Programming).

Insubstantial project (https://github.com/Insubstantial) clone for Icy (fixes + minors customizations). Previous version of the repository can be found at https://github.com/Icy-imaging/Icy-Insubstantial

Provides 3D vector mathematics classes.

BioFormats library patched to include custom version of Apache commons IO and JSON libraries

QuickHull library for Icy. Computes convex envelopes of random point sets in 2D or 3D.

ImgLib2 wrappers for Icy sequences.

The swiss army knife of plugin developers. Automatically generates elegant graphical interfaces with rich and intuitive user interaction based on your algorithm’s parameters.

Icy VTK

JavaCL library for Icy

SequenceBlocks

Detection Utilities

he track manager enables the use of DSP-like trackProcessors. This can affect the display of tracks, selection in time or by ROIs, and also compute some views like the overlaid and animated local flow graph, polar graph.

This project holds the code allowing the interaction between Java and Deep Learning frameworks.

Jama Matrix Package library for Icy

Java3D library for Icy

A tool to parse the javadoc of a file. Mostly used now by the Script Editor.

Extracts labeled objects from a binary or labeled image into ROI using connected component analysis

Manage a list of ROIs that the user can store and pop back in one click.

Create a list of tag and apply them to ROIs. Multi tag per ROI Tags are stored in sequence (persistent).