ONDEX/Core/api

ONDEX Core/base

Algorithms

Tools to manage RDF export from ONDEX graphs. See src/main/java/net/sourceforge/ondex/rdf/export/package-info.java for details.

An ONDEX Exporter plugin that exports Ondex Graph data to a JSON file ideal for cytoscapeJS, containing JSON objects which contain data related to concepts (nodes), relations (edges) and other Item Info. (metadata) including Data ...

Cypher Client KnetMiner Cypher Client

An ONDEX Exporter plugin that exports Ondex Graph data to a JSON file containing JSON objects which contain data related to concepts (nodes), relations (edges) and other Item Info. (metadata) including Data Sources, Types, Concept ...

A plug-in for the Integrator, which uses a simple XML to map from a particular TSV/CSV file structure (i.e., list of headers) to ONDEX entities.

ONDEX Neo4J Exporter

ONDEX OVTK2lite

A parser for OWL ontologies